Perhaps it's just me, but I find your post a bit confusing. I assume you softmodded using our softmod any wii guide, as you mention an original kit. If you didn't, I suggest resoftmodding using said guide, since it offers complete NTFS support.
If you are sure the setup is correct, I would suggest making a back-up of wiiflows configuration files and removing them. I never used wiiflow but it should generate new configuration files using it default settings. After that, simply check the configuration to make sure it's correct and you should be good to go.