So the pointer is upside down but only on the HBC or other programs that I installed during my modification. The pointer is fine when actually playing games or in the regular system menu.
I've searched here for answers and I've tried the following after my searches.
Reinstalled HBC didn't fix
uninstall HBC restart wii, reinstall HBC didn't fix
reset remote-didnt fix
completely restart the whole process- didn't fix it

Has anyone had this problem or have additional ideas?

Someone suggested using an older version of HBC on another old thread but I have no idea where to find an old version.