Try rehacking using the same guide. Sounds like your ios249 isn't installed properly. So try reinstalling ios249 using ios36. Then after 249 is installed you should be able to use wad manager. Your wiimotes are turning off cause your 249 isn't installed properly. Make sure to follow the guide exactly.
Wii64/WiiSX Hard Drive Fix
4.2u/ bootmii-boot2/ cfg usb loader v60/ Hermes Uloader 5.1D (for WW/VC)/ IOS 249 Rev 17/ IOS 222-223 v4/ IOS 224 v5.1/ 320gb Transcend HDD/ Darkwii System Menu Theme
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