Dios Mios and Gamecube Backups

Hello.
I've recently been trying to get Dios Mios to work using a couple gamecube games i copied over to my computer (super mario sunshine and wind waker). I'm able to successfully run them using USB Loader GX and DIOS MIOS 2.4, but for whatever reason, there seems to be issues involving the games, usually partaking during cut scenes or parts where the game has to load a new area / level. (example: 2nd cut scene in sunshine, when i die.) and wind waker (cant even load a file). these result in a black screen.
It is somewhat frustrating to have thought i finally got this working, and now it isn't. I believe i did everything correctly, but help would be appreciated. I can provide any information needed, but my wii is on 4.3u and my syscheck:

sysCheck v2.1.0b17 by Double_A and R2-D2199
...runs on IOS58 (rev 6176).


Region: NTSC-U
System Menu 4.2U (v481)
Priiloader installed
Drive date: 2006.05.26
Homebrew Channel 1.0.0 running on IOS61
Hollywood v0x11
Console ID: 68450759
Boot2 v4
Found 123 titles.
Found 46 IOS on this console. 2 of them are stub.


IOS4 (rev 65280): Stub
IOS9 (rev 54321): Trucha Bug
IOS10 (rev 768): Stub
IOS11 (rev 54321): Trucha Bug
IOS12 (rev 269): No Patches
IOS13 (rev 273): No Patches
IOS14 (rev 520): No Patches
IOS15 (rev 523): No Patches
IOS16 (rev 54321): Trucha Bug, ES Identify, Flash Access, NAND Access
IOS17 (rev 775): No Patches
IOS20 (rev 54321): Trucha Bug
IOS21 (rev 782): No Patches
IOS22 (rev 1037): No Patches
IOS28 (rev 1550): No Patches
IOS30 (rev 54321): Trucha Bug
IOS31 (rev 3349): No Patches
IOS33 (rev 3091): No Patches
IOS34 (rev 3348): No Patches
IOS35 (rev 3349): No Patches
IOS36 (rev 54321): Trucha Bug, ES Identify, NAND Access
IOS37 (rev 3869): No Patches
IOS38 (rev 3867): No Patches
IOS50 (rev 54321): Trucha Bug
IOS53 (rev 5406): Trucha Bug
IOS55 (rev 5406): No Patches
IOS56 (rev 5405): No Patches
IOS57 (rev 5661): No Patches
IOS58 (rev 6176): USB 2.0
IOS60 (rev 54321): Trucha Bug
IOS61 (rev 5661): No Patches
IOS70 (rev 54321): Trucha Bug
IOS80 (rev 54321): Trucha Bug
IOS90 (rev 54321): Trucha Bug
IOS202[60] (rev 65535, Info: hermesrodries-v6): Trucha Bug, NAND Access, USB 2.0
IOS222[38] (rev 4, Info: hermes-v4): Trucha Bug, ES Identify, NAND Access, USB 2.0
IOS223[38+37] (rev 4, Info: hermes-v4): Trucha Bug, ES Identify, NAND Access, USB 2.0
IOS224[57] (rev 65535, Info: hermesrodries-v6): Trucha Bug, NAND Access, USB 2.0
IOS236 (rev 54321): Trucha Bug, ES Identify, NAND Access
IOS245[37] (rev 21008, Info: d2x-v8final): Trucha Bug, NAND Access, USB 2.0
IOS246[38] (rev 21008, Info: d2x-v8final): Trucha Bug, ES Identify, NAND Access
IOS247[53] (rev 21008, Info: d2x-v8final): Trucha Bug, NAND Access, USB 2.0
IOS248[55] (rev 21008, Info: d2x-v8final): Trucha Bug, NAND Access, USB 2.0
IOS249[56] (rev 21008, Info: d2x-v8final): Trucha Bug, NAND Access, USB 2.0
IOS250[57] (rev 21008, Info: d2x-v8final): Trucha Bug, NAND Access, USB 2.0
IOS251[58] (rev 21008, Info: d2x-v8final): Trucha Bug, NAND Access, USB 2.0
IOS254 (rev 65281): BootMii
BC v6
MIOS v10


Report generated on 2012/11/28.
Report generated on 2012/11/28.

I think your Hard Drive is not compatible/has gone bad. Try a new HDD or a Pendrive.

I'm not entirely sure if that's the case. I've redone it correctly from what i understand, and it still does the same thing. it tells me the disc has encountered an error and to read the operations manual after reaching certain parts of games. I'm using a partritioned hard drive though, with wii games on one part and gamecube on the other. I made sure the gamecube one is primary with 32kb cluster size fat32 and i ran the game iso / roms through the program thingy and also tried installing it through discs i had.