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Depends what they are.
Wiiware/VC - Yes and is built in support for this in 4.0/4.1
Channels eg USB Loader, Neogamma - Just delete the channel using Wad manager and use the boot.dol on SD to laod the app.
IOS - Never remove any, ever or you'll likely brick.
Saves - Yes
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Uk 4.0E Wii. Wiikey2. Softmod. 320GB WD My Passport Essential WBFS/FAT32 USB Drive.
Intel i7 920 Quad core overclocked to 4Ghz, 6GB Tri-channel RAM, Radeon 4890.
If I have helped you do remember to press the little thanks button.
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